Node 64
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	1	0	0	0	A	1
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.01	0	0.98	T	0.98
10	0	0.99	0	0	C	0.99
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.01	0	0.99	T	0.99
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	0	0	1	T	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.98	0	0.02	0	A	0.98
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0.03	0.62	0.31	0.05	C	0.62
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.01	0	0.99	T	0.99
31	1	0	0	0	A	1
32	0.99	0	0.01	0	A	0.99
33	0	0	1	0	G	1
34	0	0.99	0	0.01	C	0.99
35	0.98	0	0.01	0	A	0.98
36	0.03	0	0.97	0	G	0.97
37	0.03	0	0.97	0	G	0.97
38	0	0	0	1	T	1
39	0	0.01	0	0.99	T	0.99
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.01	0	0.99	T	0.99
43	0	1	0	0	C	1
44	1	0	0	0	A	1
45	0	0.85	0	0.15	C	0.85
46	0.99	0	0.01	0	A	0.99
47	0	0	1	0	G	1
48	0	0.95	0	0.05	C	0.95
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.83	0.07	0.05	0.04	A	0.83
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.96	0	0.03	C	0.96
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.32	0	0.68	0	G	0.68
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.03	0	0.97	0	G	0.97
71	0	0	0	1	T	1
72	0.06	0	0.93	0.01	G	0.93
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0.92	0.01	0.06	C	0.92
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.99	0	0.01	C	0.99
82	0.99	0	0.01	0	A	0.99
83	0.53	0.01	0.46	0	A	0.53
84	0.02	0.63	0.02	0.33	C	0.63
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.99	0	0.01	C	0.99
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.99	0	0.01	C	0.99
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.96	0	0.03	C	0.96
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.98	0	0.02	C	0.98
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	0	1	0	0	C	1
101	0.03	0	0.97	0	G	0.97
102	0.03	0.66	0.29	0.02	C	0.66
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.04	0.08	0.81	0.07	G	0.81
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.02	0.01	0.96	0.01	G	0.96
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.08	0.91	0.01	G	0.91
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.72	0	0.28	C	0.72
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.95	0.02	0.02	C	0.95
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.01	0.72	0	0.27	C	0.72
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.96	0	0.04	C	0.96
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.6	0	0.39	0	A	0.6
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	0.01	0.99	T	0.99
137	0	1	0	0	C	1
138	0.04	0.5	0.37	0.09	C	0.5
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.37	0	0.63	T	0.63
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.99	0	0.01	C	0.99
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0.01	0	0.99	0	G	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.42	0.01	0.57	0	G	0.57
151	0.65	0	0.35	0	A	0.65
152	0	0.99	0	0	C	0.99
153	0	0.97	0	0.02	C	0.97
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.92	0	0.08	C	0.92
157	0.98	0	0.02	0	A	0.98
158	0.01	0	0.98	0	G	0.98
159	0	0.92	0	0.08	C	0.92
160	1	0	0	0	A	1
161	0	1	0	0	C	1
162	0.04	0.08	0.87	0.02	G	0.87
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.99	0	0.01	0	A	0.99
167	0	1	0	0	C	1
168	0	0.97	0	0.02	C	0.97
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.67	0	0.32	C	0.67
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.02	0	0.98	0	G	0.98
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.02	0	0.98	0	G	0.98
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.75	0	0.24	C	0.75
181	0	0	1	0	G	1
182	0	0	0	1	T	1
183	0	0.98	0	0.02	C	0.98
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.96	0	0.04	C	0.96
187	0.05	0.95	0	0	C	0.95
188	1	0	0	0	A	1
189	0	0.98	0	0.02	C	0.98
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.99	0	0.01	C	0.99
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.99	0	0.01	C	0.99
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.88	0	0.12	C	0.88
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.04	0	0.96	T	0.96
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.02	0	0.98	0	G	0.98
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.67	0	0.33	C	0.67
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0.99	0	0.01	C	0.99
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0	0.98	0	G	0.98
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0	0	1	0	G	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.04	0.01	0.95	0.01	G	0.95
226	0	0.99	0	0.01	C	0.99
227	1	0	0	0	A	1
228	0.01	0	0.99	0	G	0.99
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.27	0	0.73	0	G	0.73
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	0.98	0	0.01	0	A	0.98
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0	0.06	0	0.94	T	0.94
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.01	0	0.99	0	G	0.99
241	0	0	0	1	T	1
242	0.88	0	0.01	0.11	A	0.88
243	0	0.53	0	0.46	C	0.53
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.06	0.33	0.57	0.05	G	0.57
247	0.06	0.33	0.59	0.03	G	0.59
248	0	0.99	0	0.01	C	0.99
249	0.05	0.41	0.41	0.14	G	0.41
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.02	0	0.98	0	G	0.98
254	0.33	0.57	0.05	0.05	C	0.57
255	0.14	0.01	0.83	0.01	G	0.83
256	0.16	0.76	0.06	0.02	C	0.76
257	0.98	0	0.01	0	A	0.98
258	0.03	0	0.96	0.01	G	0.96
259	0	1	0	0	C	1
260	0	0	0	1	T	1
261	0.01	0	0.98	0	G	0.98
262	0	1	0	0	C	1
263	0.99	0	0.01	0	A	0.99
264	0.06	0	0.93	0	G	0.93
265	0.97	0	0.03	0	A	0.97
266	0	0.99	0	0.01	C	0.99
267	0.07	0.11	0.8	0.02	G	0.8
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.03	0.09	0.86	0.02	G	0.86
271	0	0	1	0	G	1
272	0.89	0.1	0	0	A	0.89
273	0.08	0.08	0.82	0.02	G	0.82
274	0	0	0	1	T	1
275	0	0	1	0	G	1
276	0	0.98	0	0.02	C	0.98
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.94	0	0.06	C	0.94
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.99	0	0.01	C	0.99
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.65	0	0.34	C	0.65
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.98	0	0.02	C	0.98
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.87	0	0.13	C	0.87
295	0.94	0.06	0	0	A	0.94
296	0	0	1	0	G	1
297	0.05	0.42	0.38	0.15	C	0.42
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.72	0	0.28	0	A	0.72
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.94	0	0.06	C	0.94
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.01	0	0.99	0	G	0.99
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.48	0	0.51	0	G	0.51
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.95	0.01	0.03	C	0.95
313	0.96	0.01	0.02	0.01	A	0.96
314	0	0	0.01	0.98	T	0.98
315	0	0.97	0	0.03	C	0.97
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.01	0.57	0	0.42	C	0.57
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.22	0.04	0.02	0.72	T	0.72
325	1	0	0	0	A	1
326	0	0.99	0	0	C	0.99
327	0	0.96	0.01	0.03	C	0.96
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.01	0	0.98	0	G	0.98
331	0	0.99	0	0.01	C	0.99
332	1	0	0	0	A	1
333	0.01	0	0.98	0	G	0.98
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.05	0.07	0.76	0.12	G	0.76
337	0	0.99	0	0.01	C	0.99
338	0.99	0	0.01	0	A	0.99
339	0	0.97	0	0.03	C	0.97
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.62	0	0.38	0	A	0.62
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.09	0	0.91	0	G	0.91
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.02	0	0.98	0	G	0.98
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0.46	0	0.53	0.01	G	0.53
353	0	0	0	1	T	1
354	0.05	0.06	0.39	0.5	T	0.5
355	0.86	0	0.14	0	A	0.86
356	0	0	0	1	T	1
357	0	0.32	0	0.68	T	0.68
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	1	0	0	C	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.68	0	0.31	C	0.68
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.49	0.23	0.25	0.02	A	0.49
368	0.21	0	0.79	0	G	0.79
369	0	0.98	0	0.02	C	0.98
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.62	0	0.38	0	A	0.62
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.95	0	0.04	C	0.95
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.97	0	0.03	C	0.97
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0	0	1	T	1
385	0.99	0	0	0	A	0.99
386	0	0.01	0	0.99	T	0.99
387	0	1	0	0	C	1
388	0	0	0	1	T	1
389	0	0	1	0	G	1
390	0	0.91	0	0.08	C	0.91
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.68	0	0.32	C	0.68
394	0.03	0	0.96	0	G	0.96
395	0	1	0	0	C	1
396	0	0.99	0.01	0	C	0.99
397	0	1	0	0	C	1
398	0	1	0	0	C	1
399	0.03	0	0.97	0	G	0.97
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.31	0.01	0.67	0.01	G	0.67
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.43	0	0.56	0	G	0.56
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0.01	0.98	0	G	0.98
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.02	0	0.98	0	G	0.98
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	0.98	0	0.01	C	0.98
424	1	0	0	0	A	1
425	0	0	1	0	G	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.02	0.86	0.08	0.04	C	0.86
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.93	0.01	0.06	C	0.93
433	0.99	0	0.01	0	A	0.99
434	0	0	0	1	T	1
435	0	0.19	0	0.81	T	0.81
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	0.8	0	0.2	0	A	0.8
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	1	0	0	C	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.09	0	0.91	T	0.91
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.06	0	0.94	T	0.94
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0.01	0.52	0	0.47	C	0.52
451	0	1	0	0	C	1
452	0	0	0	1	T	1
453	0.06	0.09	0.78	0.07	G	0.78
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.01	0	0.99	T	0.99
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0	0	1	0	G	1
460	0	0	0	1	T	1
461	0.54	0	0.46	0	A	0.54
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAATTTAGAACACTTTAAGCAGGTTTATCACAGCGGACGCAAGTGGCAGCGCTGCGTGGAAGCCATCAACAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATCGGCGATTCACTGTCCTATCGCGTGGAGACCGACAGCACG---ACCGACGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTACGCGGCGAAAGCGCAGCTGCAGACGGTGGAGTGCTACCGCGACGAAACCGACAGCGAATACCTGAAGGGCATC---GGCGATACCGTGCAGGTGCACGAAGGGCAGATGGTTATTTGCGACAACAGCGAAGCCTACCGCTTTATCTGCGACGCCCCGGTG------AAGAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTATTTCCTGAATAAGTAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAATTTAGAACACTTTAAGCAGGTTTATCACAGCGGACGCAAGTGGCAGCGCTGCGTGGAAGCCATCAACAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATCGGCGATTCACTGTCCTATCGCGTGGAGACCGACAGCACGACCGACGCGCTGTTCGTCGGCCACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTACGCGGCGAAAGCGCAGCTGCAGACGGTGGAGTGCTACCGCGACGAAACCGACAGCGAATACCTGAAGGGCATCGGCGATACCGTGCAGGTGCACGAAGGGCAGATGGTTATTTGCGACAACAGCGAAGCCTACCGCTTTATCTGCGACGCCCCGGTGAAGAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTATTTCCTGAATAAGTAA

The accuracy score for that sequence is 0.951666666666668

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.48775982500273e-12.
The natural log of that probability is -26.7196384790703.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	0.99	A	0	9999	
L	0.99	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
H	0.67	Q	0.34	1.97058823529412	
F	1	A	0	9999	
K	0.99	R	0.01	99	
Q	0.9702	R	0.0099	98	
V	0.97	I	0.03	32.3333333333333	
Y	1	A	0	9999	
H	1	A	0	9999	
S	0.99	G	0.01	99	
G	0.99	A	0	9999	
R	0.99	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.97	M	0.0279	34.7670250896057	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.503712	S	0.437184	1.15217391304348	Unreliable
N	1	A	0	9999	
I	1	A	0	9999	
D	0.99	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
R	0.97	H	0.0204	47.5490196078431	
P	1	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
A	1.01	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
S	0.99	A	0.01	99	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
E	0.99	D	0.01	99	
T	0.637065	A	0.343035	1.85714285714286	
D	1	A	0	9999	
S	0.9604	G	0.0196	49	
T	1.01	A	0	9999	
	0	-	0	0
T	0.9801	A	0.0099	99	
D	0.99	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	0.99	A	0	9999	
V	1	A	0	9999	
G	1	A	0	9999	
H	0.95	N	0.05	19	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1.01	A	0	9999	
Q	0.99	X	0.01	99	
Q	1	A	0	9999	
K	0.99	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
Y	0.8712	F	0.1089	8	
A	1.01	R	0	9999	
A	0.589941	P	0.329967	1.78787878787879	
K	1	A	0	9999	
A	0.553014	E	0.313698	1.76288659793814	
Q	0.737352	K	0.155232	4.75	
L	0.99	A	0	9999	
Q	0.9801	R	0.0099	99	
T	0.9603	A	0.0297	32.3333333333333	
V	1	A	0	9999	
E	0.801	A	0.1	8.01	
C	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	0.99	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
S	0.5358	R	0.4642	1.154243860405	Unreliable
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	0.99	A	0	9999	
G	0.99	A	0	9999	
I	0.9408	V	0.0196	48	
	0	-	0	0
G	1	A	0	9999	
D	0.76	E	0.24	3.16666666666667	
T	0.99	A	0	9999	
V	0.99	A	0	9999	
Q	0.9801	X	0.0099	99	
V	1	A	0	9999	
H	0.9801	R	0.0099	99	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.99	I	0.01	99	
V	0.53	I	0.2806	1.8888096935139	
I	0.86	V	0.14	6.14285714285714	
C	1	A	0	9999	
D	0.99	A	0	9999	
N	1	A	0	9999	
S	0.3871	G	0.1975	1.96	
E	1	A	0	9999	
A	0.99	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	0.9801	T	0.0099	99	
C	0.99	A	0	9999	
D	1	A	0	9999	
A	0.96	T	0.03	32	
P	1	A	0	9999	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	0.99	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	0.99	V	0.01	99	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	0.99	L	0.01	99	
L	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEHFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDST-TDALFVGHRRYFEVHYYLQGQQKIEYAAKAQLQTVECYRDETDSEYLKGI-GDTVQVHEGQMVICDNSEAYRFICDAPV--KKVVLRVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEHFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDSTTDALFVGHRRYFEVHYYLQGQQKIEYAAKAQLQTVECYRDETDSEYLKGIGDTVQVHEGQMVICDNSEAYRFICDAPVKKVVLRVTIEDGYFLNKX

The accuracy score for that sequence is 0.964989226666666

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.00129055102806957
The natural log of that probability is -6.65268599827036.

